I have two sets of depth coverage file from GATK 2.5-2 and would like to merge them. however, I am facing the following error.
ERROR: Could not read any samples from /medpop/mpg-psrl/Parabase/Projects/XHMM/group3.DATA.sample_summary [expected suffix in header is: _mean_cvg]
the header of the file looks like as following, ...'
sample_id total mean granular_third_quartile granular_median granular_first_quartile %_bases_above_15
c1121LEVa_out 2889209608 61.43 97 54 27 86.2
c1015EAGa 3376953408 71.80 109 70 40 91.5
c1135QXOa 2104061838 44.73 63 38 21 82.6
c1131CARa_out 3739532095 79.50 129 81 42 90.8
c1119THOa_out 3122424859 66.38 107 60 30 87.7
c1031SMIa 3004514137 63.88 99 58 29 87.1
m1015HAYa.40286 2127170066 45.22 64 43 24 85.4
c1017PRIa_out 3263380845 69.38 113 64 33 88.7
Total 23627246856 502.33 N/A N/A N/A
I appreciate your comment,