How XHMM work
Hi @fromer I am interested in how xhmm work.The paper tells much about the pre-processing steps, but little about how hmm step work with the input parameters.I am wondering if there is any detailed...
View ArticleTrain once, predict many times.
Hi, I have spent some days playing around with XHMM, and I have managed to follow and reproduce the output in the tutorial. However, I am still not sure whether XHMM is the right tool for my task at...
View ArticleCould not read any samples from GATK depthcoverage file.
I have two sets of depth coverage file from GATK 2.5-2 and would like to merge them. however, I am facing the following error. ERROR: Could not read any samples from...
View ArticleCalling a deletion as a duplication
I was able to get through the xhmm pipeline without any drama! Unfortunately, I ran into a problem where multiple people in a family have a deletion in a certain region, and some people in the family...
View ArticlePLINK/Seq tools and some errors.
Hi! I'm trying to use XHMM for CNV detection but I have a few problems: 1) I'm following this quide http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml for the use and I installed PLINK/Seq tools but when...
View ArticleXHMM support is no longer available here
For XHMM support, please go to http://atgu.mgh.harvard.edu/xhmm/questions.shtml
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